Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs7736669 chr5:1608591 A/G 2.79E-6 503 27.1 35.33 31.3 KM Plot
THCA rs7736938 chr5:38768482 A/G 0.000129 490 31.37 34.25 33.97 KM Plot
THCA rs77376252 chr10:81809382 C/T 2.33E-5 489 31.8 30.53 20.5 KM Plot
THCA rs77376446 chr7:16468347 T/C 3.6E-5 494 31.38 31.98 33.48 KM Plot
THCA rs7738071 chr6:133085116 G/A 3.22E-15 495 31.53 31.77 30.53 KM Plot
THCA rs7738256 chr6:133113066 C/G 5.79E-9 496 31.47 33.7 23.53 KM Plot
THCA rs7738400 chr6:133085301 G/C 1.07E-11 495 31.68 31.13 30.53 KM Plot
THCA rs7738569 chr6:133113237 C/T 5.79E-9 496 31.47 33.7 23.53 KM Plot
THCA rs7744961 chr6:133107503 C/T 7.56E-5 498 31.47 35.2 23.53 KM Plot
THCA rs77505796 chr10:104647774 A/T 8.83E-14 501 31.37 36.17 32.1 KM Plot
THCA rs77530786 chr7:64254821 GTGCTGCAGGTC/G 9.48E-5 501 31.47 33.2 31.27 KM Plot
THCA rs7758531 chr6:133085302 T/C 1.07E-11 495 31.68 31.13 30.53 KM Plot
THCA rs7758703 chr6:133085417 T/C 1.07E-11 495 31.68 31.13 30.53 KM Plot
THCA rs7759524 chr6:133109574 A/G 7.56E-5 498 31.47 35.2 23.53 KM Plot
THCA rs77598986 chr16:79271143 A/G 8.69E-12 492 31.5 31.97 19.35 KM Plot